Data -> Plutella xylostella
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| Resource | [Genomic] [GFF3] [mRNA] [Protein] |
|---|---|
| Data source | DBM-DB |
| Publication | You, M. et al. A heterozygous moth genome provides insights into herbivory and detoxification. Nature genetics 45, 220-225 (2013). [PDF] |
| Organism strain | "DBM-FZ-S" |
| Assembly | DBM-DB v1.0 |
| Genomic Size | 383 Mb |
| GC content | 38.34% |
| Number of scaffolds | 1,819 |
| Scaffold N50 | 737,183 |
| Number of contigs | 38,757 |
| Contig N50 | 18,517 |
| Gene Set | DBM-DB v1.0 |
| Gene | 18,072 |
| Protein | 18,072 |
| BioSample | SAMN02953808 |
| Submitter | Plutella xylostella genome consortium |
| Assembly level | Scaffold |
| GenBank assembly accession | GCA_000330985.1 |
| RefSeq assembly accession | GCF_000330985.1 |
| WGS Project | AHIO01 |
| Assembly method | BAC by BAC v. JUN-2011 |
| Sequencing technology | Illumina Hiseq2000 |
| Tissue | Egg |
|---|---|
| Year | 2012 |
| Platform | Illumina |
| Layout | PAIRED |
| Raw reads | 29,117,726 |
| Data accession | SRR179062 |
| Assemble software | Trnity |
| Contigs | 87,647 |
| Annotated | 39,221 |
| Reference | He W, You M, Vasseur L, et al. Developmental and insecticide-resistant insights from the< i> de novo assembled transcriptome of the diamondback moth,< i> Plutella xylostella[J]. Genomics, 2012, 99(3): 169-177. |
| Download | [Fasta] |
| Tissue | Larva |
|---|---|
| Year | 2012 |
| Platform | Illumina |
| Layout | PAIRED |
| Raw reads | 28,588,990 |
| Data accession | SRR179508 |
| Assemble software | Trnity |
| Contigs | 63,573 |
| Annotated | 29,097 |
| Reference | He W, You M, Vasseur L, et al. Developmental and insecticide-resistant insights from the< i> de novo assembled transcriptome of the diamondback moth,< i> Plutella xylostella[J]. Genomics, 2012, 99(3): 169-177. |
| Download | [Fasta] |
| Tissue | Pupa |
|---|---|
| Year | 2012 |
| Platform | Illumina |
| Layout | PAIRED |
| Raw reads | 27,514,263 |
| Data accession | SRR179509 |
| Assemble software | Trnity |
| Contigs | 82,625 |
| Annotated | 36,059 |
| Reference | He W, You M, Vasseur L, et al. Developmental and insecticide-resistant insights from the< i> de novo assembled transcriptome of the diamondback moth,< i> Plutella xylostella[J]. Genomics, 2012, 99(3): 169-177. |
| Download | [Fasta] |
| Tissue | Adult |
|---|---|
| Year | 2012 |
| Platform | Illumina |
| Layout | PAIRED |
| Raw reads | 28,100,307 |
| Data accession | SRR179510 |
| Assemble software | Trnity |
| Contigs | 78,362 |
| Annotated | 36,608 |
| Reference | He W, You M, Vasseur L, et al. Developmental and insecticide-resistant insights from the< i> de novo assembled transcriptome of the diamondback moth,< i> Plutella xylostella[J]. Genomics, 2012, 99(3): 169-177. |
| Download | [Fasta] |
| Tissue | chlorpyrifos-resistant larva |
|---|---|
| Year | 2012 |
| Platform | Illumina |
| Layout | PAIRED |
| Raw reads | 28,318,950 |
| Data accession | SRR179511 |
| Assemble software | Trnity |
| Contigs | 69,120 |
| Annotated | 33,903 |
| Reference | He W, You M, Vasseur L, et al. Developmental and insecticide-resistant insights from the< i> de novo assembled transcriptome of the diamondback moth,< i> Plutella xylostella[J]. Genomics, 2012, 99(3): 169-177. |
| Download | [Fasta] |
| Tissue | fipronil-resistant larva |
|---|---|
| Year | 2012 |
| Platform | Illumina |
| Layout | PAIRED |
| Raw reads | 29,793,272 |
| Data accession | SRR179587 |
| Assemble software | Trnity |
| Contigs | 74,699 |
| Annotated | 34,889 |
| Reference | He W, You M, Vasseur L, et al. Developmental and insecticide-resistant insights from the< i> de novo assembled transcriptome of the diamondback moth,< i> Plutella xylostella[J]. Genomics, 2012, 99(3): 169-177. |
| Download | [Fasta] |
